Links
Outside Collaborators
- Ulli Bayer Department of Pharmacology, University of Colorado Health Sciences Center
- Daniel Choquet Physiologie Cellulaire de la Synapse, UMR CNRS 5091/Université de Bordeaux
- Benoit Dubertret Laboratoire d'Optique Physique, École Supérieure de Physique et de Chimie Industrielles de la Ville de Paris
- Andy Hudmon Department of Biochemistry and Molecular Biology, Indiana University School of Medicine
- Neal Waxham Department of Neurobiology and Anatomy, UT-Houston Medical School
- Paul W. Wiseman Department of Chemistry, McGill University
Mentors
Free software
- CalC ("Calcium Calculator") is a modeling tool for integrating the 3D reaction-diffusion problem (or the corresponding reduced 1D and 2D problems) arising in biophysical modeling of intracellular calcium dynamics (GPL license).
- Cell Electrophysiology Simulation Environment (CESE) is a comprehensive framework specifically designed to perform computational electrophysiological simulation (GPL license).
- EONS is an interactive program that allows the conceptual modeling of a synapse. It was designed to provide users with a computational tool to better understand the interactions between elements within the synapse, as well as the influence of its geometry.
- GDL: GNU Data Language is a free IDL (Interactive Data Language) compatible incremental compiler (GPL license) IDL is a registered trademark of Research Systems Inc.
- HHsim: Graphical Hodgkin-Huxley Simulator (GPL license)
- ImageJ is a Java image processing program (public domain license).
- JabRef is a Java GUI for managing BibTeX and other bibliographies (GPL license).
- LTP Program is a stimulation, data acquisition and on-line analysis program for studying Long-Term Potentiation (LTP), Long-term Depression (LTD), and related phenomena.
- MaxChelator is a series of program(s) for determining the free metal concentration in the presence of chelators.
- Nerve is a Java applet that simulates the generation and propagation of an action potential.
- Neuron is an environment for empirically-based simulations of neurons and networks of neurons.
- PDP++ Software is a neural-network simulation system written in C++.
- pDRAW32 is a DNA analysis software
by AcaClone software. (freeware)
- phpScheduleIt is an open source web based resource scheduling software (GPL license).
- Serf is useful for the analysis of electrophysiological data. (freeware)
- Simple PHP Blog (SPHPBlog) is a dead-simple blog software that does not require a database, uses flat text files, and looks nice (GPL license).
- SNNAP(Simulator for Neural Networks and Action Potentials) is a tool for rapid development and simulation of realistic models of single neurons and neural networks.
- Strathclyde Electrophysiology Software is a suite of programs for recording and analysing signals from intracellular electrophysiology experiments (at the discretion of the author, the software is supplied free of charge to academic users and others working for non-commercial, non-profit making, organisations).
Miscellany